While the stature and role of the CIA were greatly diminished under Goss during the congressionally ordered reorganization of the intelligence agencies, his counterpart at the Pentagon, Defense Secretary Donald H. Rumsfeld, continued his aggressive efforts to develop a clandestine intelligence operation within his department. The Pentagon’s human intelligence unit and its other clandestine military units are expanding in number and authority. Rumsfeld recently won the ability to sidestep U.S. ambassadors in certain circumstances when the Pentagon wants to send in clandestine teams to collect intelligence or undertake operations.
"Rumsfeld keeps pressing for autonomy for defense human intelligence and for SOF [Special Forces] operations," said retired Army Col. W. Patrick Lang, former head of Middle East affairs at the Defense Intelligence Agency. "CIA has lost the ability to control the [human intelligence] process in the community."
Now, "the real battle lies between" Negroponte and Rumsfeld, said retired Army Lt. Gen. Donald Kerrick, a former deputy national security adviser and once a senior official at the Defense Intelligence Agency. "Rumsfeld rules the roost now."